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Displaying 26 - 50 of 538

Jointly benchmarking small and structural variant calls with vcfdist

October 2, 2024
Author(s)
Tim Dunn, Justin Zook, James Holt, Satish Narayanasamy
In this work, we extend vcfdist to be the first variant call benchmarking tool to jointly evaluate phased single-nucleotide polymorphisms (SNPs), small insertions/deletions (INDELs), and structural variants (SVs) for the whole genome. First, we find that a

Value assignment and uncertainty evaluation for certified reference gas mixtures

September 9, 2024
Author(s)
Christina Cecelski, Jennifer Carney, Antonio Possolo
The procedures used to assign values to certified reference gas mixtures and to evaluate their associated uncertainties, which are described in ISO 6143, and that were variously improved by Guenther and Possolo (Anal Bioanal Chem 399:489–500, 2011. 10.1007

Metabolomics 2023 Workshop Report: Moving Toward Consensus on Best QA/QC Practices in LC-MS-Based Untargeted Metabolomics

July 9, 2024
Author(s)
Tracey Schock, Jonathan Mosley, Warwick Dunn, Julia Kuligowski, Matthew Lewis, Maria Monge, Candice Ulmer Holland, Dajana Vuckovic, Krista Zanetti
Introduction: During the Metabolomics 2023 conference, the Metabolomics Quality Assurance and Quality Control Consortium (mQACC) presented a workshop focusing on key quality assurance and quality control (QA/QC) topic categories for LC-MS-based untargeted

Certification of Standard Reference Material(R) 1955a Homocysteine in Frozen Human Serum

June 21, 2024
Author(s)
Carolyn Burdette, Elena Wood, Jerome Mulloor, Michael Nelson, Blaza Toman, Aaron Urbas
Standard Reference Material (SRM) 1955a Homocysteine in Frozen Human Serum is intended for use in validating homocysteine measurement procedures used by in vitro diagnostics manufacturers, reference laboratories, and clinical laboratories in the United

Characterization of Reference Material 8210: Hemp Plant

June 20, 2024
Author(s)
Colleen E. Bryan Sallee, Walter Brent Wilson, Charles Barber, Monique Johnson, Jenna Klingsick, Jerome Mulloor, Blaza Toman, Elena Wood, Laura Wood, Andrea Yarberry
The National Institute of Standards and Technology (NIST) Reference Material (RM) 8210 Hemp Plant delivers non certified values for cannabinoids and toxic elements in a dried ground hemp plant material to help cannabis and forensic laboratories for use as

Homogenization of Large Batch Frozen Materials Using the Palla-VM-KT Vibrating Mill

May 21, 2024
Author(s)
Debra Ellisor, Amanda Moors, Jennifer Hoguet, Jennifer Ness, Amanda Capuano, Olivia Franco
The Biospecimen Science Group at the National Institute of Standards and Technology (NIST) Biorepository has been responsible for the curation, maintenance, and preparation of biological specimens at cryogenic temperatures since 2002. The team's expertise

Traceable localization enables accurate integration of quantum emitters and photonic structures with high yield

March 18, 2024
Author(s)
Craig R. Copeland, Adam L. Pintar, Ronald G. Dixson, Ashish Chanana, Kartik Srinivasan, Daron Westly, Robert Ilic, Marcelo Davanco, Samuel M. Stavis
In a popular integration process for quantum information technologies, localization microscopy of quantum emitters guides lithographic placement of photonic structures. However, a complex coupling of microscopy and lithography errors degrades registration

Differential scanning calorimetry (DSC): An important tool for polymer identification and characterization of plastic marine debris

February 19, 2024
Author(s)
Jennifer Lynch, Raquel Corniuk, Kayla C. Brignac, Melissa Jung, Joelle Marchiani, Wanda Weatherford
Differential scanning calorimetry (DSC), a routine thermoanalytical method in material science, is gaining utility in plastic pollution research to improve polymer identification. We optimized a DSC method, experimentally testing pan types, temperature

Measurement of 100 nm Monodisperse Particles by Four Accurate Methods: Uncertainty and Traceability

February 12, 2024
Author(s)
George Mulholland, Kaleb Duelge, Vincent A. Hackley, Natalia Farkas, John A. Kramar, Keiji Takahata, Michael Zachariah, Hiromu Sakurai, Kensei Ehara
Accurate measurements of particle diameter are necessary for quantitative characterization of key aerosol properties including the Cunningham slip correction, charging probability, the diffusion coefficient, the coagulation coefficient, and optical

Certification of Standard Reference Material(R) 2983 Inorganics in Geoduck Clam Tissue (Panopea generosa)

January 29, 2024
Author(s)
Colleen E. Bryan Sallee, Melannie Bachman, Steven J. Christopher, Debra Ellisor, Michael Ellisor, Jennifer Hoguet, Samuel Huntington, Caleb Luvonga, Amanda Moors, Dhayaalini Nadarajan, Tomohiro Narukawa, Jennifer Ness, Rebecca Pugh, James H. Yen, Lee L. Yu
Standard Reference Material (SRM) 2983 Inorganics in Geoduck Clam Tissue (Panopea generosa) is intended to be used for the evaluation of methods for the determination of elements, arsenic species, and proximates in this and similar matrices. A unit of SRM

Dietary Supplement Laboratory Quality Assurance Program: Exercise 1 Final Report

November 1, 2023
Author(s)
Carolyn Burdette, Hugh Hayes, Jenna Klingsick, Colleen E. Bryan Sallee, Charles Barber, Steven J. Christopher, Lee L. Yu
The DSQAP was launched, in collaboration with the NIH ODS, in 2007. The program was established to enable laboratories to improve the accuracy of measurements in samples for nutrients, marker compounds, toxic elements, and/or contaminants in dietary

Certification of Standard Reference Material(R) 2386 Avocado Powder

October 18, 2023
Author(s)
Melissa M. Phillips, Laura Wood, Joseph Browning, George Caceres, Grace Hahm, Mahboubeh Hanaee, Abigail Lee, Karen Murphy, Rabia Oflaz, Rick L. Paul, Benjamin Place, Jeanice "Brown Thomas ", James H. Yen
The National Institute of Standards and Technology (NIST) recently released SRM 2386 Avocado Powder which has value assignment for over 70 analytes. This material is intended to be used for the evaluation of methods for the determination of elements

Multi-omics characterization of NIST seafood reference materials and alternative matrix preparations

September 18, 2023
Author(s)
Debra Ellisor, Amanda Bayless, William Davis, Tracey Johnston, Benjamin Trey Knott, John Seghers, Hanne Leys, Hakan Emteborg
The National Institute of Standards and Technology (NIST) has prepared four seafood reference materials (RMs) for use in food safety and nutrition studies: wild-caught and aquacultured salmon (RM 8256 and RM 8257) and wild-caught and aquacultured shrimp

The complete sequence of a human Y chromosome

August 23, 2023
Author(s)
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah Hoyt, Dylan Taylor, Nathanael David Olson, Justin Zook, Adam Phillippy
The human Y chromosome has been notoriously difficult to sequence and assemble because of its complex repeat structure that includes long palindromes, tandem repeats and segmental duplications1,2,3. As a result, more than half of the Y chromosome is

Recommendations for Setting a Criterion for Assessing Commutability of Secondary Calibrator Certified Reference Materials

August 11, 2023
Author(s)
W. Greg Miller, Thomas Keller, Jeffrey Budd, Jesper Johansen, Mauro Panteghini, Neil Greenberg, Vincent Delatour, Ferruccio Ceriotti, Robert Rej, Johanna Camara, Liesbet Deprez, Finlay MacKenzie, Alicia Lyle, Eline van der Hagen, Chris Burns, Pernille Fauskanger, Sverre Sandberg
A secondary higher-order calibrator is required to be commutable with clinical samples to be suitable for use in the calibration hierarchy of an end-user clinical laboratory in vitro diagnostic medical device (IVD-MD). Commutability is a property of a

Food Nutrition and Safety Measurements Quality Assurance Program: Exercise 1 Final Report

May 18, 2023
Author(s)
Colleen E. Bryan Sallee, Melissa M. Phillips, Charles Barber, Carolyn Burdette, Laura Wood, Shaun Kotoski
The Food Nutrition and Safety Measurements Quality Assurance Program (FNSQAP) was launched in 2021. FNSQAP was established to assist laboratories in the development and validation of new analytical methods, in improving the quality of their analytical

Variant calling and benchmarking in an era of complete human genome sequences

April 14, 2023
Author(s)
Nathanael David Olson, Justin Wagner, Nathan Dwarshuis, Karen Miga, Marc L. Salit, Justin Zook
Genetic variant calling from DNA sequencing has enabled understanding of germline variation in hundreds of thousands of humans. Sequencing technologies and variant-calling methods have advanced rapidly, routinely providing reliable variant calls in most of

Humanized Monoclonal Antibody IgG1k, NISTmAb RM 8671 Summary of 5 Year Stability Verification (5YSV)

March 31, 2023
Author(s)
Katharina Yandrofski, John E. Schiel, Trina Mouchahoir, Srivalli Telikepalli, N. Alan Heckert, Dean C. Ripple, Paul C. DeRose, Karen W. Phinney, John Marino
NISTmAb RM 8671 is an IgG1κ monoclonal antibody that has been extensively characterized and released as the first of its kind biopharmaceutical reference material in 2016. This material was intended primarily for use in evaluating the performance of
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