October 2, 2024
      
                  
        
  Author(s)
  Tim  Dunn,   Justin  Zook,   James  Holt,   Satish  Narayanasamy
 
       
            
    
    
        In this work, we extend vcfdist to be the first variant call benchmarking tool to jointly evaluate phased single-nucleotide polymorphisms (SNPs), small insertions/deletions (INDELs), and structural variants (SVs) for the whole genome. First, we find that a