Gene Copy Number Dictates Extracellular Vesicle Cargo

Published

June 7, 2025

Author(s)

Sumeet Poudel, Zhiyong He, Jerilyn Izac, Lili Wang

Abstract

Extracellular vesicles (EVs) are membrane-surrounded vesicles that carry heterogeneous cellular components, including proteins, nucleic acids, lipids, and metabolites. EVs' intravesicular and surface contents possess many biomarkers of physiological and pathological importance. Because of the heterogeneous cargo, EVs can mediate local and distal cell–cell communication. However, the way in which the genome signature regulates EV cargo has not been well studied. This study aimed to understand how genetics impact EV cargo loading. EVs were isolated from vector copy number cells with a fluorescent reporter (GFP) with varying inserted transgene copies and from NIST SRM 2373 cells (MDA-MB-231, MDA-MB-453, SK-BR-3, and BT-474), which contain varying copies of the HER2 gene. Spectradyne nCS1 was utilized to count EVs and measure size distribution. Imaging Flow Cytometry was used to analyze the surface protein content of single EVs and for total EV counts. The RNA content of the EVs was measured using ddPCR. Our results from stable reporter cell lines and breast cancer cell lines suggest that the gene copy number dictates the protein cargo of the EVs but not the RNA content. Increasing copies of a reporter gene (GFP) or a naturally occurring gene (HER2) from breast cancer cells correlated with increasing EV counts positive for the protein cargo compared to total EV counts until a copy threshold was reached. This study has broad implications for understanding EV biology in the context of cancer biology, diagnostics, EV biology/manufacturing, and therapeutic delivery.

Citation

International Journal of Molecular Sciences

Volume

26

Issue

12

Pub Type

Journals

Download Paper

https://doi.org/10.3390/ijms26125496

Local Download

Keywords

EV, EV cargo, EV protein loading, EV RNA loading, EV Imaging Flow Cytometry Analysis, EV biology, gene copy numbers

Citation

Poudel, S. , He, Z. , Izac, J. and Wang, L. (2025), Gene Copy Number Dictates Extracellular Vesicle Cargo, International Journal of Molecular Sciences, [online], https://doi.org/10.3390/ijms26125496, https://tsapps.nist.gov/publication/get_pdf.cfm?pub_id=959624 (Accessed January 9, 2026)