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Proteins Assume Top Role in New
Disease-Fighting Tools

  • Power to analyze how genes make proteins is boosted from 100 genes simultaneously to 50,000.
  • ATP-funded research leads to three new processes, about 5 patents, and more than $100 million in deals with five companies.
  • The technologies already have provided new clues to human cancer and crop diseases.

Novel strategies and technologies for analyzing how genes function are rapidly opening new windows of understanding on diseases in humans and other species, promising to reduce substantially the costs of developing new drugs while improving treatments. The technical advances were achieved by CuraGen Corp., of New Haven, Conn., with co-funding from NIST's Advanced Technology Program (ATP). Whereas conventional genetic studies typically analyze the chemical sequence or mutations in genes, the company focused instead on the proteins made by genes. In two separate joint ventures, one with Soane Technologies, Inc., and the other with American Cyanamid Co., CuraGen developed processes, hardware, and software for analyzing gene expression (how cells use the genetic information in DNA to make proteins), interactions between proteins (which are associated with cell function and disease states), and molecules that could serve as effective drugs. The ATP funding was critical, according to CuraGen, because it was a rare source of early support for research on gene expression that enabled the development of practical technologies offering both high sensitivity and high yield. 

The two ATP projects, both spanning 1995 to 1998, led directly to three automated processes, each consisting of an enabling technology used to generate data, software, and a database of the results. One process can identify 95 percent of the genes expressed in any cell including novel genes and those expressed at very low levels. The second process tests simultaneously for interactions between billions of combinations of proteins and assembles biological pathways of genes whose protein products interact. The third process screens the identified genes against libraries of molecules that might bind to the proteins and thus be candidate drugs. In addition to making deals with five companies hoping to discover new drugs and agricultural products, CuraGen uses the new technologies in internal research on several diseases and has discovered 13 disease-related genes. The company also has grown from 17 to more than 300 employees, and its initial public offering raised more than $45 million. CuraGen and Pioneer Hi-Bred International, Inc., recently announced the discovery of a gene that degrades a toxin produced by a mold that often develops in corn. The discovery represents a major step toward eliminating the toxin, which can be fatal to livestock.

ATP funding: $4,646,000 (two projects)
Non-ATP funding: $5,806,000 (two projects)

For more information

April 2000