NIST Authors in Bold
| Author(s): | Arlin B. Stoltzfus; |
|---|---|
| Title: | Mutation-Biased Adaptation in a Protein NK Model |
| Published: | October 01, 2006 |
| Abstract: | Evolutionary trends responsible for systematic differences in genome and proteome composition have been attributed to GC:AT mutation bias in the context of neutral evolution or to selection acting on genome composition. A possibility that has been ignored, presumably because it is part of neither the Modern Synthesis nor the Neutral Theory, is that mutation may impose a directional bias on adaptation. This possibility is explored here with simulations of the effect of a GC:AT bias on amino acid composition during adaptive walks on an abstract protein fitness landscape called an “NK” model. The results indicate that adaptation does not preclude mutation-biased evolution. In the complete absence of neutral evolution, a modest GC:AT bias of realistic magnitude can displace the trajectory of adaptation in a mutationally favored direction, to such a degree that amino acid composition is biased substantially and persistently. Thus, mutational explanations for evolved patterns need not presuppose neutral evolution. |
| Citation: | Molecular Biology and Evolution |
| Volume: | 23 |
| Issue: | 10 |
| Pages: | pp. 1852 - 1862 |
| Keywords: | mutation bias; GC content; NK model; simulation; adaptive evolution; adaptive walk |
| Research Areas: |