References

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May 25, 2004

References

LISP and Miscl programming

Booch, Grady, "Object Oriented Design with Applications", Benhamin/Cummings, Redwood City, CA, 1991. QA76.64.b66
Steele, Guy Jr., "Common Lisp, the Language, 2nd Ed.", Digital Press, 1990
Engber, Michael S., "Macintosh Common LISP - MCL - a power development environment often overlooked by Macintosh programmers", MacTech Magazine, Jan 1993 pp. 66-73.
Winston, P.H. and Horn, B.K.P, "LISP, 2nd Edition", Addison-Wesley, Reading Massachusetts. This is a very good book with which to learn LISP.

MacLispix / Lispix

D.S. Bright and R. B. Marinenko (1992), "Concentration histogram imaging: a quantitative view of related images", Microscopy: The Key Research Tool 22(1): 21-28 (March 1992).
Bright, D.S. and Newbury, D.E. (1991) "Concentration Histogram Imaging", Analytical Chemistry 63(4):243A-250A, (Feb. 15) 1991.
Bright, D.S., "A Lisp-based Image Analysis System With Applications to Microscopy", J. Microscopy 148(pt.1):51-87(1987) (a predecessor to MacLispix)
Bright, D.S. "MacLispix: A Special Purpose Public Domain Image Analysis Program for the Macintosh.", Microbeam Analysis 4 (1995) 151-163.

Image processing books

Ballard (1982), Computer Vision --TA1632.B34--
Baxes, Gregory A (1994) DIGITAL IMAGE PROCESSING, Wiley *IT* (includes disk with PC software)
Castleman, Kenneth (1979), Digital image Processing Prentice-Hall, --TA1632.C37-- (recommended by UTHSCSA Image Tool)
Foley, J.D., VanDam, A. (1982) FUNDAMENTALS OF INTERACTIVE COMPUTER GRAPHICS, Reading Massachusetts, Addison-Wesley, chapter 17.
Gonzalez,R.C. (1977), DIGITAL IMAGE PROCESSING, Reading Massachusetts: Addison_Wesley.
Gonzalez,R.C. and Wintz, P. (1987), DIGITAL IMAGE PROCESSING 2nd Edition, ADDISON WESLEY, Reading Mass.
Kaye, Brian H. (1989), A RANDOM WALK THROUGH FRACTAL DIMENSIONS, VCH, New York.
Marr, David (1982) VISION, W. H. Freeman
Pavlidis, T. (1982) ALGORITHMS FOR GRAPHICS AND IMAGE PROCESSING, Computer Sci. Press, Rkvl., MD.
Pavlidis,T. (1977) STRUCTURAL PATTERN RECOGNITION, New York: Springer-Verlag.
Pratt, W. K. (1978), DIGITAL IMAGE PROCESSING. New York: Wiley-Interscience. TA1632.P7
Rosenfeld, A. and Kak,A. C. (1982), DIGITAL PICTURE PROCESSING, Second Edition, Vol. 1,2. NY: Academic Press, TA1630.R67
Russ, J.C. (1986), PRACTICAL STEREOLOGY. New York: Plenum Press
Russ, J.C. (1990), COMPUTER-ASSISTED MICROSCOPY, The Measurement and Analysis of Images, Plenum, N.Y.
Russ, J.C. (1992), THE IMAGE PROCESSING HANDBOOK, CRC Press, Boca Raton, FL
Russ, John C.(1995), THE IMAGE PROCESSING HANDBOOK, 2nd ed., CRC Press. *IT*
Wegman, E.J., DePriest,D.J. (eds) (1986) STATISTICAL IMAGE PROCESSING GRAPHICS, NY,Marcel Dekker Inc.

Image processing journals:

CVGIP: Image Understanding T385:c573 (aka Computer Vision Graphics and Image Processing)
CVGIP: Graphical Models and Image Processing T385.c572 (aka Computer Vision Graphics and Image Processing)
IEEE Transactions on Pattern Analysis and Machine Intelligence--TK7882.P312
IEEE Transactions on Systems, Man, and Cybernetics--Q300.I43--
Journal of Computer-Assisted Microscopy--QH201.J63--
Journal of Microscopy (GB) - increasing number of applied image processing articles
Pattern Recognition--Q327.P36--
Advanced Imaging - a trade Publication. write: 225 Broad Hollow Road, Melville NY 11747-4722 attn: circulation
Microbeam Analysis (Journal of the MAS - discontinued 1996).
JMSA (Journal of the Microscopy Soc of America. )

Image Processing Review Articles

Pavlidis, T. (1986) "A .. survey . image analysis ..", 8th Int'l Conf Patt Recog. Proc 27 Oct. 1986, Paris p502
Pavlidis, T. , et.al. (Editors) , Ann rev of comp sci. Vol.3 pp.: 121-46 ,1988
Rosenfeld, A. (1990) "Image analysis ...: 1989", Comput. Vis. Graph. Image Proc. (USA)50(2):188-240.

Image Processing Articles

Lipkin,L.E., Watt,W.C., Kirsch,R.A.(1966) "The analysis, synthesis and description of biological images", Ann. N.Y. Acad. Sci. 128:984-1012.
Kirsch,R.A., L. Cahn, C. Ray, G.H. Urban," Experiments in processing pictorial information with a digital computer", Proc.Eastern Joint Computer Conf., Dec. 9-13, 1957, Inst. Radio Eng. and Assn.ComputingMach. This article started the field of computer image processing. (RAK)
Kirsch,R.A. , "Computer interpretation of English text and picture patterns", IEEE Trans. Elect. Comp., EC-13 (Aug. 1964), pp. 363- 376. This one started the syntactic pattern recognition field. (RAK)
Bright, D. S. publications

FFT References

Russ, John C.(1995), THE IMAGE PROCESSING HANDBOOK, 2nd ed., CRC Press. Chapter 5, pp. 283-346.
NIH Image and associated programs
- http://rsb.info.nih.gov/nih-image/
- downloads -> nih-image_spin-offs -> Image-fft
- ftp://codon.nih.gov/pub/nih-image/nih-image_spin-offs/imageFFT/thesis.hqx.
- Also download the two examples archives - which have some of the figures for the thesis.

Pages related to Microscopy and Image processing

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Microscopy
- Microscopy Society of America http://www.msa.microscopy.com/ ftp.msa.microscopy.com
- Microscopy Related NIST Software http://www.nist.gov/cstl/div837/837.02/MicroscopySoftware.html (MacLispix is developed in the context of electron microscopy (and other microscopies) and microanalysis at The National Institute of Standards and Technology, NIST).
- Microscopy world resources pointer http://www.mwrn.com/
- Microscopy online http://www.Microscopy-Online.com/
- NIH Integrated Microscopy Resource http://www.bocklabs.wisc.edu/imr/imr.html
- Microscopy & Microanalysis server. (Nestor Zaluzec ) http://www.amc.anl.gov/
- 3D reconstruction http://biocomp.arc.nasa.gov:80/3dreconstruction/
- Microscopy virtual library http://www.ou.edu/research/electron/www-vl/
- Microscopy pointers Oklahoma U http://www.ou.edu/research/electron/mirror/
- Multidimensional microscopies http://corn.eng.buffalo.edu/
- Nanoworld, U. Queensland http://www.uq.oz.au/nanoworld/nanohome.html
- tips http://www.biotech.ufl.edu/~emcl/tips.html
- Microscopy Online http://www.Microscopy-Online.com/
- Lehigh University short courses http://www.lehigh.edu/~inmatsci/Microscourses.html
- OSU microscopy society http://www.ou.edu/research/electron/oms/
Public Domain Software
- Mac
  - NIH Image http://rsb.info.nih.gov/nih-image/ NIH Image is a widely used image processing program. NIH Image page in MacLispix Docs, tutorial on web: http://rsb.info.nih.gov/nih-image/more-docs/Tutorial/Tutorial.html
  - MacLispix (for Power Mac only) http://www.nist.gov/lispix
  - Info Mac - general Mac software http://hyperarchive.lcs.mit.edu/HyperArchive.html
  - Mac Orchard - shareware/freeware internet applications. Helper applications for web browsers.
- PC only
  - Scion Image PC look-alike of NIH Image (No longer available. Formerly written and supported by Scion Corp.)
  - Imagetool (for PC, windows95 or windows NT. Many functions of Image, but different user interface) http://ddsdx.uthscsa.edu/dig/itdesc.html. Also includes links to over 20 image processing sites. (Site not responding as of 9/99).
  - Porting NIH Image to PC by other means: http://www.cipe.com/DOS/DOS.html This is a page of tips from teh Center for Image Processing in Education, Tucson AZ
- Mac and PC
  - ImageJ - successor to NIH Image. Written in JAVA, Maintained by Wayne Rasband. Large user group and lots of contributed plug-ins. Now has most of capability of old NIH Image on Mac, plus much new capability (9/02 DSB).
  - NCSA National Center for Supercomputing Applications