This tool is for making a mosaic of images by joining the images together where they match.
For a series of data cubes: you manually make a mosaic of one element by arranging the images for that element, then Lispix will make mosaics for other elements using the positions you saved.
For a folder of images - just arrange the images.
How To Use
Some convenient ways to arrange the thumbnails so that they are close to where they should be, are in the Initialize Button.:
Move the thumbnails with the mouse, so that they allign.
"Fine tune" by jogging the top thumbnail (last clicked) with the arrow keys.
** Continue Editing Here.
Make Mosaic Select the group or groups for the mosaic. Lispix writes a TIFF file of the mosaic.
All cubes to be registered are in their own folder, along with any elemental images, and any other files. Let's call these folders Cube Folders. All the Cube Folders are within a single folder - the Run Folder. The Run folder can contain other folders and files which Lispix ignores.
To register the cubes, you need images. These can be made from the cubes using Lispix, or some other program. The images for any cube should be in their respective Cube Folder, and have the Element Symbol, e.g. "Au", "Pt", "Ca", "S", or some other unique indicative string, e.g. "BSE" as part of their name. For registering, as well as for making a mosaic, you will type in the Element Symbol or indicative string. If this selects more than one image for the cube, Lispix will ask which image to use, or which selection scheme you wish to use, such as shortest name or longest name.
Arrange the images by moving them around manually. Whenever you close this window, lispix saves the image positions in a file "temp-positions".txt, and will use these positions when you begin next time. Once you have an arrangement you wish to keep, save the positions in "cube-positions" using Save. Lispix uses the cube-positions.txt file to make the mosaic. Lispix saves both position text files in the top level of the Run Folder.
The position of an image is changed any time you move its thumbnail. The precision of the position thus depends on the zoom. You save full (single precision) locations for an image only when moving it shown full size. You can lock an image to ensure that you don't move it accidentally. Be sure to Save the positions after adjusting at full size the ones you want to include in the mosaic.