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Information Science Standards to
Enable Biomedical Research

Satellite meeting for “Digital Biology: The Emerging Paradigm”

November 4-5, 2003           Bethesda, Maryland

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Jim Ostell's Bio:

Jim Ostell's ImageDr. Ostell received a Masters degree in Zoology from the University of Massachusetts and a Ph.D. in Cellular and Developmental Biology from Harvard University. He was the author of the popular sequence analysis package, MacVector. At the founding of National Center for Biotechnology Information (NCBI) in 1988, Dr. Ostell became the Chief of the Information Engineering Branch, and is responsible for designing, developing, deploying and maintaining all the public resources at NCBI. This includes PubMed, GenBank, BLAST, Entrez, OMIM, PubMed Central, NCBI BookShelf, GEO, dbEST, dbSNP,
UniGene, LocusLink, RefSeq, and others. NCBI assembles the human genome sequence used as the standard framework for human gene models by every major site in the world and produces the set of curated Human (and other organism) RefSeq mRNAs is the standard reagent for finding and labeling characterized human genes. The RefSeq manual and automated annotation pipelines also include bacteria and viruses. The annotation of the Vancouver SARS coronavirus to the level of mature peptides was provided to the Vancouver group by NCBI in less than a day. PubMed is the largest biomedical bibliographic resource in the world, incorporating publications electronically from thousands of journals. NCBI is the most heavily used biomedical information resource in the world, interactively serving almost 400,000 unique users a day at rates of more than 700 web hits a second, and providing almost a terabyte of data a day by ftp. NCBI must incorporate vast amounts of data in real time ranging from sequences to genomes to structures to research articles to books in hundreds of different styles and formats, serve it to the public in other styles and formats, while attempting to also offer some direction on how this might be done better.


Date created: 7/24/03
Last Updated: 7/24/03
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